Package com.im.commons.db.ddl.tablesets

Class AbstractJChemTableSetInfo

java.lang.Object

com.im.commons.db.ddl.tablesets.TableSetInfo

com.im.commons.db.ddl.tablesets.AbstractJChemTableSetInfo

All Implemented Interfaces:

AbstractInfo, java.io.Serializable

Direct Known Subclasses:

JChemBaseTableSetInfo, JChemCartridgeAbstractTableSetInfo

public abstract class AbstractJChemTableSetInfo
extends TableSetInfo

Abstract base class of a TableSetInfo for a JChem table (cartridge of JChemBase).

Author:

Martin Adamek

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected boolean	absoluteStereo
protected int	numberOfEdges
protected int	numberOfInts
protected int	numberOfOnes
protected SchemaQualifiedName	propertyTable
protected java.lang.String	standardizerConfig
protected java.lang.String	structureColumnName
protected int	tableType
protected java.lang.String	tableVersion
protected boolean	tautomerDuplicateChecking

Fields inherited from class com.im.commons.db.ddl.tablesets.TableSetInfo

tableInfos

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AbstractJChemTableSetInfo()

Method Summary

Modifier and Type	Method	Description
protected void	buildToString(java.lang.StringBuilder builder)
java.lang.String	getChemicalTermsDefinitionForColumn(java.lang.String columnName)
java.util.Map<java.lang.String,java.lang.String>	getChemicalTermsDefinitions()	A Map of the chemical terms columns definitions.
abstract int	getJChemTableIndex()
DBTableInfo	getJChemTableInfo()	Get the tableInfo for the JChemBase table.
DBTableInfo	getJChemTableInfoFull()
int	getNumberOfEdges()
int	getNumberOfInts()
int	getNumberOfOnes()
abstract java.lang.String	getPropertyNamePrefixForJChemBaseTableInPropertyTable()	Get the prefix that identifies this JChem table's properties in the JChem property table.
SchemaQualifiedName	getPropertyTable()
java.lang.String	getStandardizerConfig()
java.lang.String	getStructureColumnName()	The name of the structure column which is used by this index.
int	getTableType()	The contents of the table as defined by one of the TABLE_TYPE_* constants.
java.lang.String	getTableVersion()
boolean	isAbsoluteStereo()
boolean	isTautomerDuplicateChecking()
void	setAbsoluteStereo(boolean absoluteStereo)
void	setTautomerDuplicateChecking(boolean tautomerDuplicateChecking)

Methods inherited from class com.im.commons.db.ddl.tablesets.TableSetInfo

addToModel, clone, getJoins, getTableInfos, getTableNames, getType, removeFromModel, schemaPlusTable, toString, updateLazyTableInfos, updateTableInfos, updateTableInfosRemoveProxies

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

structureColumnName

protected java.lang.String structureColumnName

propertyTable

protected SchemaQualifiedName propertyTable

numberOfOnes

protected int numberOfOnes

numberOfInts

protected int numberOfInts

numberOfEdges

protected int numberOfEdges

tableType

protected int tableType

tableVersion

protected java.lang.String tableVersion

absoluteStereo

protected boolean absoluteStereo

tautomerDuplicateChecking

protected boolean tautomerDuplicateChecking

standardizerConfig

protected java.lang.String standardizerConfig

Constructor Detail

AbstractJChemTableSetInfo

protected AbstractJChemTableSetInfo()

Method Detail

getPropertyTable

public final SchemaQualifiedName getPropertyTable()

getStructureColumnName

public final java.lang.String getStructureColumnName()

The name of the structure column which is used by this index.

Returns:

The name of the structure column

getNumberOfOnes

public final int getNumberOfOnes()

getNumberOfInts

public final int getNumberOfInts()

getNumberOfEdges

public final int getNumberOfEdges()

getStandardizerConfig

public final java.lang.String getStandardizerConfig()

isAbsoluteStereo

public final boolean isAbsoluteStereo()

setAbsoluteStereo

public final void setAbsoluteStereo(boolean absoluteStereo)

isTautomerDuplicateChecking

public final boolean isTautomerDuplicateChecking()

setTautomerDuplicateChecking

public final void setTautomerDuplicateChecking(boolean tautomerDuplicateChecking)

getTableVersion

public final java.lang.String getTableVersion()

getTableType

public final int getTableType()

The contents of the table as defined by one of the TABLE_TYPE_* constants.

Returns:

The table type

getChemicalTermsDefinitions

public final java.util.Map<java.lang.String,java.lang.String> getChemicalTermsDefinitions()

A Map of the chemical terms columns definitions. The keys are the column names and the values are the chemical terms expressions. e.g. Key: LOGP (column name). Value: logP() (chem terms function)

Returns:

The map of the chemical terms columns definitions

getChemicalTermsDefinitionForColumn

public final java.lang.String getChemicalTermsDefinitionForColumn(java.lang.String columnName)

getJChemTableIndex

public abstract int getJChemTableIndex()

Returns:

The table index of the actual JChemBase table. Usually 0, but in the case of a cart index using a standard table this will be 1.

getJChemTableInfo

public final DBTableInfo getJChemTableInfo()

Get the tableInfo for the JChemBase table.

Returns:

JChemBase table DBTableInfo

getJChemTableInfoFull

public final DBTableInfo getJChemTableInfoFull()

getPropertyNamePrefixForJChemBaseTableInPropertyTable

public abstract java.lang.String getPropertyNamePrefixForJChemBaseTableInPropertyTable()

Get the prefix that identifies this JChem table's properties in the JChem property table. e.g. "table.APP.PUBCHEM_DEMO." The string includes the trailing "."

Returns:

The prefix

buildToString

protected void buildToString(java.lang.StringBuilder builder)

Overrides:

buildToString in class TableSetInfo