Huckel Analysis Plugin
This manual gives you a walk-through on how to use the Hückel Analysis Plugin:
Introduction
The Hückel Analysis Plugin is able to calculate different structural descriptors for aromatic atoms.
Localization energies L(+) and L(-) for electrophilic and nucleophilic attack at an aromatic center are calculated by the Hückel method. A smaller L(+) or L(-) value means more reactive atomic location. Order of atoms in E(+) or in Nu(-) attack are adjusted according to their localization energies. The total π energy, the π electron density and the total electron density are also calculated by Hückel method. Depending on the chemical environment, the following atoms have optimal Coulomb and resonance integral parameters: B, C, N, O, S, F, Cl, Br, I.
All other atoms have a default, non-optimized parameter. Theoretical background is taken from Isaacs' book. Additional literature for the Hückel's parameters is Streitwieser's book.
The results appear in a new window, indicating the calculated values at the atoms in the aromatic ring. In the following example the first picture is the result of Aromatic E(+)/Nu(-) order calculation, while the second picture is the result of a Pi energy calculation.
Fig. 1 Aromatic E(+)/Nu(-) calculation result
Fig. 2 Pi energy calculation result
Options
The following calculation parameters can be set in the Huckel Analysis Options window:
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Decimal places: setting the number of decimal places with which the result value is given.
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Type: sets the type of the calculation. That could be:
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E(+)/Nu(-) order: numbers the aromatic atoms according to their probability of being attacked by electrophiles or nucleophiles.
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Localization energy L(+)/L(-): gives the localization energies of the aromatic center (dimension β).
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Pi energy: calculates the π energy of the aromatic ring(s) (dimension β).
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Electron density: calculates the π electron density.
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Charge density: calculates total charge density on the ring atoms.
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Subtype: E(+) or Nu(-): for E(+)/Nu(-) order and localization energy L(+)/L(-), the electrophilicity and nucleophilicity approaches can be selected (at least one of them). Results for E(+) are coloured red, and Nu(-) blue.
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Take major microspecies at pH: calculates the values for the major microspecies at the given pH.
Fig. 3 Huckel Analysis Options window
References
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Isaacs, N.S., Physical Organic Chemistry, John Wiley & Sons, Inc., New York, 1987, ISBN 0582218632.
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Streitwieser, A., Molecular Orbital Theory for Organic Chemists, John Wiley, 1961, ISBN 0471833584.