reactionquerydrawing

Draw reaction query

importexport

Core classes for import / export modules

license

License manager

drawing

Drawable components

util

Frequently used utility classes

concurrent

Concurrent processing

logging

Extra classes for logging

view

MarvinView GUI core classes

sketchstart

Core classes that are called by MarvinSketch startup

lwsketchmenu

Classes to load menu in MarvinSketch from file

sketchmenu

Classes to load menu in MarvinSketch without file

sketchmenubg

Extra classes for menu in MarvinSketch

sketchbackground

Menu actions and other resources that are not required immediately by MarvinSketch startup

sketch

Core MarvinSketch classe

smarts

Smarts module

nullexport

Dummy Null export module

smilesimport

SMILES import

molimport

MDL mol format import

sybylexport

Tripos Sybyl export

sybylimport

Tripos Sybyl import

mol2export

Tripos Mol2 export

mol2import

Tripos Mol2 import

mrvexport

MRV export

cmlexport

CML export

cdximportexport

CDX import/export

gzipexport

Gzip export

gzipimport

Gzip import

base64export

Base64 export

base64import

Base64 import

xyzexport

XYZ export

inchi

IUPAC InChi import/export

hydrogenize

Hydrogenize module

pdbexport

PDB export

spacefill

Spacefill module

atomlabellers

Module for drawing atom labels

superatomsgroupcoords

Superatom Sgroup Coordinates module

threedim

3D utility functions

xyzimport

XYZ import

goutimport

Gout import

gjfexport

Gjf export

charmmimport

CharmmGrid import

pdbimport

PDB import

jpegexport

Jpeg export

msbmpexport

MS BMP image export

pngexport

PNG image export

ppmexport

PPM image export

povexport

POV image export

svgexport

SVG graphics export

vectgraphicsexport

PDF grapics export and old EMF graphics export

imageexport

common classes for various image export modules

documenthandling

Document handling

mchart

MChart module

abbrevgroups

Abbreviation groups dialog

reaxysgenerics

Generic groups dialog

abbrevgroupexport

Abbreviationgroup export

clean2d

Clean 2D

clean3d

Clean 3D

modelling

Modelling package

atommapper

Mapping atoms

singlelinerecordreader

SingleLine record reader

nameexport

IUPAC name export

nameimport

IUPAC name import

peptidevmnimport

Peptide and VMN import

peptideexport

Peptide export

skc

Skc file format import/export

common.swing.aboutjvm

About dialog

common.swing.editmolfileframe

EditMolfile frame

common.swing.exceptionframe

Exception frame

common.swing.help

Help dialog

common.swing.loadsave

Load/save dialog

common.swing.print

Print module

common.swing.regenbonds

Regenerate bonds

common.swing.preferences

Preferences dialog

common.swing.fontediting

Font attributes panel

sketch.edit

Utility for S-groups

sketch.linesm

Polyline drawing mode

sketch.boxsm

Rectangle drawing

sketch.bracketsm

Bracket drawing

sketch.swing.periodicdialog

Periodic system dialog

sketch.swing.rlogicdialog

Rlogic dialog

sketch.swing.groupcreationdialog

Create group dialog

sketch.swing.attachdatadialog

Attach data dialog

sketch.swing.textboxeditor

Text box editor

sketch.swing.templates

Handling templates

sketch.swing.mobjectpropertiesdialog

Graphical object properties dialog

sketch.swing.guiconfigurationdialog

Menu configuration dialog

view.scripter

Helper class for handling JavaScript invokes

view.swing.viewdnd

Drag and drop in MarvinView

view.swing.imageviewframe

Image viewer frame

view.swing.mviewanimator

Molecule rotation in MarvinView

view.swing.mviewframe

Popup MarvinView frame

view.swing.mviewsketch

Popup MarvinSketch frame from MarvinView

view.swing.printview

Additional resource for print in MarvinView

view.swing.molsframe

Display multiple molecules in a separate frame

view.swing.tableview

Spreadsheet table renderer

view.swing.gridbagview

Moleculematrix table renderer

view.swing.find

Find dialog

view.swing.showconformers

Display conformers

Plugin

Core and GUI classes for calculator plugins

plugins.Alignment

Alignment plugin

plugins.CalculationsCore

Core classes needed for calculator plugins

plugins.Protonation

Protonations plugins

plugins.Partitioning

Partitioning plugins

plugins.Tautomers

Tautomer plugins

plugins.Analysers

Analyser plugins

plugins.MolecularModelling

Plugins for molecular modelling

plugins.MarkushEnumeration

Markush enumeration plugin

plugins.Other

Other plugins

checkers

Various structure checkers

propertyeditor

Classes for editing atom/bond/molecule properties

jep

jep package

icons

Icons mainly for the menus