MacroMolecule.DrawType

Draw type of all macromolecules on the scene

"Wire", "Stick", "Ball", "BallAndStick", "StickAndBall", "BallAndWire", "WireAndBall", "Spacefill"

Wire

MacroMolecule.ColorType

Color type of all macromolecules on the scene

"Constant", "CPK", "Residue", "Chain", "Rainbow", "B-factor", "Secondary Structure"

CPK

MacroMolecule.Quality

Quality of all macromolecules on the scene

"High", "Medium", "Low"

Medium

MacroMolecule.Hydrogens

Hydrogens of macromolecules are displayed or not. Note that hydrogens are not calculated for macromolecules.

true, false

false

MacroMolecule.LonePairs

Lone pairs of macromolecules are displayed or not.

true, false

false

MacroMolecule.BallRadius

Radius of displayed balls in angstroms

Double

0.4

MacroMolecule.BondRadius

Radius of bond cylinders in ball&stick mode in angstroms

Double

0.1

MacroMolecule.StickRadius

Radius of bond cylinders in stick mode in angstroms

Double

0.15

MacroMolecule.LineWidth

Width of displayed lines in wire mode in pixels

Double

2

MacroMolecule.BondDistance

Gap between two lines/sticks representing a double bond. It is determined as a percentage of Bond radius.

Integer

100

MacroMolecule.BondWidth

Thickness of line/stick representing a double bond. It is expressed relative to the thickness of a single bond.

Integer

50

MacroMolecule.SmoothStickStyle

Smooth, shaded display of two colored bonds

true, false

false

MacroMolecule.ScaledBalls

Are balls scaled according to vdW radius or have uniform size in ball mode or not

true, false

false

MacroMolecule.DisplayBondOrder

Double, aromatic bonds are displayed differently from single bonds or not

true, false

true

MacroMolecule.Color

The color used in constant color mode

java.awt.Color

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