Overlapping Bonds
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Checker searches for overlapping bonds: bonds crossing each other or bonds closer to each other than the set minimal value.
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Fixer offers cleaning the structure by:
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2D clean or (clean);
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partial clean (partialclean).
 
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Example :
| 
         Overlapping Bonds Checker (overlappingBonds)  | 
                
         Warning:  | 
                
         Fix  | 
        
| 
         Clean (clean)  | 
        ||
| 
         Detect Overlapping Bonds  | 
                
               | 
                
               | 
        
Note : Bridged polycycles are cleaned as far as their structure allows it, and the overlapping bonds warning will remain.