Ligand.DrawType

Draw type of all ligands/small molecules on the scene

"Wire", "Stick", "Ball", "BallAndStick", "StickAndBall", "BallAndWire", "WireAndBall", "Spacefill"

BallAndStick

Ligand.ColorType

Color type of all ligands/small molecules on the scene

"Constant", "CPK"

CPK

Ligand.Quality

Quality of all ligands/small molecules on the scene

"High", "Medium", "Low"

Medium

Ligand.Hydrogens

Hydrogens of ligands are displayed or not. Note that hydrogens are always calculated whether they are described in the input or not.

true, false

false

Ligand.LonePairs

Lone pairs of ligands are displayed or not.

true, false

false

Ligand.BallRadius

Radius of displayed balls in angstroms

Double

0.4

Ligand.BondRadius

Radius of bond cylinders in ball&stick mode in angstroms

Double

0.1

Ligand.StickRadius

Radius of bond cylinders in stick mode in angstroms

Double

0.3

Ligand.LineWidth

Width of displayed lines in wire mode in pixels

Double

2

Ligand.BondDistance

Gap between two lines/sticks representing a double bond. It is determined as a percentage of Bond radius.

Integer

100

Ligand.BondWidth

Thickness of line/stick representing a double bond. It is expressed relative to the thickness of a single bond.

Integer

50

Ligand.SmoothStickStyle

Smooth, shaded display of two colored bonds

true, false

false

Ligand.ScaledBalls

Are balls scaled according to vdW radius or have uniform size in ball mode or not

true, false

false

Ligand.DisplayBondOrder

Double, aromatic bonds are displayed differently from single bonds or not

true, false

true

Ligand.Color

The color used in constant color mode

java.awt.Color

#fff050