Secondary Structure parameters

Parameter

Meaning

Possible values

Default

SecondaryStructure.DrawType

Draw type of all secondary structure components of the scene

  • Trace,

  • Tube,

  • PipeAndPlank,

  • RibbonLines,

  • Ribbon,

  • CartoonSquare,

  • Cartoon

Cartoon

SecondaryStructure.ColorType

Color type of all secondary structure components of the scene

"Constant", "Residue", "Chain", "Rainbow", "B-factor", "SecondaryStructure"

SecondaryStructure

SecondaryStructure.Quality

Quality of all secondary structure components of the scene

"High", "Medium", "Low"

Medium

SecondaryStructure.Color

The color used in constant color mode

java.awt.Color

#ffffff

SecondaryStructure.HelixWidth

.

Float

1.2

SecondaryStructure.HelixDepth

.

Float

0.3

SecondaryStructure.HelixShift

.

Float

2.5

SecondaryStructure.HelixArrow

.

true, false

true

SecondaryStructure.HelixArrowWidth

.

Float

3.8

SecondaryStructure.SheetWidth

.

Float

1.2

SecondaryStructure.SheetDepth

.

Float

0.4

SecondaryStructure.SheetArrow

.

true, false

true

SecondaryStructure.SheetArrowWidth

.

Float

3.8

SecondaryStructure.CoilWidth

.

Float

0.3

SecondaryStructure.CoilDepth

.

Float

0.3

SecondaryStructure.CoilUniform

.

true, false

true

SecondaryStructure.Threads

.

Integer

6