Applet modules
reactionquerydrawing |
Draw reaction query |
importexport |
Core classes for import / export modules |
license |
License manager |
drawing |
Drawable components |
util |
Frequently used utility classes |
concurrent |
Concurrent processing |
logging |
Extra classes for logging |
view |
MarvinView GUI core classes |
sketchstart |
Core classes that are called by MarvinSketch startup |
lwsketchmenu |
Classes to load menu in MarvinSketch from file |
sketchmenu |
Classes to load menu in MarvinSketch without file |
sketchmenubg |
Extra classes for menu in MarvinSketch |
sketchbackground |
Menu actions and other resources that are not required immediately by MarvinSketch startup |
sketch |
Core MarvinSketch classe |
smarts |
Smarts module |
nullexport |
Dummy Null export module |
smilesimport |
SMILES import |
molimport |
MDL mol format import |
sybylexport |
Tripos Sybyl export |
sybylimport |
Tripos Sybyl import |
mol2export |
Tripos Mol2 export |
mol2import |
Tripos Mol2 import |
mrvexport |
MRV export |
cmlexport |
CML export |
cdximportexport |
CDX import/export |
gzipexport |
Gzip export |
gzipimport |
Gzip import |
base64export |
Base64 export |
base64import |
Base64 import |
xyzexport |
XYZ export |
inchi |
IUPAC InChi import/export |
hydrogenize |
Hydrogenize module |
pdbexport |
PDB export |
spacefill |
Spacefill module |
atomlabellers |
Module for drawing atom labels |
superatomsgroupcoords |
Superatom Sgroup Coordinates module |
threedim |
3D utility functions |
xyzimport |
XYZ import |
goutimport |
Gout import |
gjfexport |
Gjf export |
charmmimport |
CharmmGrid import |
pdbimport |
PDB import |
jpegexport |
Jpeg export |
msbmpexport |
MS BMP image export |
pngexport |
PNG image export |
ppmexport |
PPM image export |
povexport |
POV image export |
svgexport |
SVG graphics export |
vectgraphicsexport |
PDF grapics export and old EMF graphics export |
imageexport |
common classes for various image export modules |
documenthandling |
Document handling |
mchart |
MChart module |
abbrevgroups |
Abbreviation groups dialog |
reaxysgenerics |
Generic groups dialog |
abbrevgroupexport |
Abbreviationgroup export |
clean2d |
Clean 2D |
clean3d |
Clean 3D |
modelling |
Modelling package |
atommapper |
Mapping atoms |
singlelinerecordreader |
SingleLine record reader |
nameexport |
IUPAC name export |
nameimport |
IUPAC name import |
peptidevmnimport |
Peptide and VMN import |
peptideexport |
Peptide export |
skc |
Skc file format import/export |
common.swing.aboutjvm |
About dialog |
common.swing.editmolfileframe |
EditMolfile frame |
common.swing.exceptionframe |
Exception frame |
common.swing.help |
Help dialog |
common.swing.loadsave |
Load/save dialog |
common.swing.print |
Print module |
common.swing.regenbonds |
Regenerate bonds |
common.swing.preferences |
Preferences dialog |
common.swing.fontediting |
Font attributes panel |
sketch.edit |
Utility for S-groups |
sketch.linesm |
Polyline drawing mode |
sketch.boxsm |
Rectangle drawing |
sketch.bracketsm |
Bracket drawing |
sketch.swing.periodicdialog |
Periodic system dialog |
sketch.swing.rlogicdialog |
Rlogic dialog |
sketch.swing.groupcreationdialog |
Create group dialog |
sketch.swing.attachdatadialog |
Attach data dialog |
sketch.swing.textboxeditor |
Text box editor |
sketch.swing.templates |
Handling templates |
sketch.swing.mobjectpropertiesdialog |
Graphical object properties dialog |
sketch.swing.guiconfigurationdialog |
Menu configuration dialog |
view.scripter |
Helper class for handling JavaScript invokes |
view.swing.viewdnd |
Drag and drop in MarvinView |
view.swing.imageviewframe |
Image viewer frame |
view.swing.mviewanimator |
Molecule rotation in MarvinView |
view.swing.mviewframe |
Popup MarvinView frame |
view.swing.mviewsketch |
Popup MarvinSketch frame from MarvinView |
view.swing.printview |
Additional resource for print in MarvinView |
view.swing.molsframe |
Display multiple molecules in a separate frame |
view.swing.tableview |
Spreadsheet table renderer |
view.swing.gridbagview |
Moleculematrix table renderer |
view.swing.find |
Find dialog |
view.swing.showconformers |
Display conformers |
Plugin |
Core and GUI classes for calculator plugins |
plugins.Alignment |
Alignment plugin |
plugins.CalculationsCore |
Core classes needed for calculator plugins |
plugins.Protonation |
Protonations plugins |
plugins.Partitioning |
Partitioning plugins |
plugins.Tautomers |
Tautomer plugins |
plugins.Analysers |
Analyser plugins |
plugins.MolecularModelling |
Plugins for molecular modelling |
plugins.MarkushEnumeration |
Markush enumeration plugin |
plugins.Other |
Other plugins |
checkers |
Various structure checkers |
propertyeditor |
Classes for editing atom/bond/molecule properties |
jep |
jep package |
icons |
Icons mainly for the menus |