Secondary Structure parameters
Parameter |
Meaning |
Possible values |
Default |
SecondaryStructure.DrawType |
Draw type of all secondary structure components of the scene |
|
Cartoon |
SecondaryStructure.ColorType |
Color type of all secondary structure components of the scene |
"Constant", "Residue", "Chain", "Rainbow", "B-factor", "SecondaryStructure" |
SecondaryStructure |
SecondaryStructure.Quality |
Quality of all secondary structure components of the scene |
"High", "Medium", "Low" |
Medium |
SecondaryStructure.Color |
The color used in constant color mode |
java.awt.Color |
#ffffff |
SecondaryStructure.HelixWidth |
. |
Float |
1.2 |
SecondaryStructure.HelixDepth |
. |
Float |
0.3 |
SecondaryStructure.HelixShift |
. |
Float |
2.5 |
SecondaryStructure.HelixArrow |
. |
true, false |
true |
SecondaryStructure.HelixArrowWidth |
. |
Float |
3.8 |
SecondaryStructure.SheetWidth |
. |
Float |
1.2 |
SecondaryStructure.SheetDepth |
. |
Float |
0.4 |
SecondaryStructure.SheetArrow |
. |
true, false |
true |
SecondaryStructure.SheetArrowWidth |
. |
Float |
3.8 |
SecondaryStructure.CoilWidth |
. |
Float |
0.3 |
SecondaryStructure.CoilDepth |
. |
Float |
0.3 |
SecondaryStructure.CoilUniform |
. |
true, false |
true |
SecondaryStructure.Threads |
. |
Integer |
6 |