MarvinView Structure display parameters
Parameter |
Meaning |
|
absLabelVisible |
Show (true) or hide (false) "Absolute" label |
false |
aminoAcidBondColoringEnabled |
Enable (true) or disable (false) peptide bridge coloring |
true |
atomFont |
Atom symbol/label font: Serif, SansSerif or Monospaced |
SansSerif |
atomMappingVisible |
Show (true) or hide (false) atom mapping |
true |
atomPropertiesVisible |
Show (true) or hide (false) atom properties |
true |
atomNumbersVisible |
Deprecated |
|
atomNumberingType |
Sets the type of atom numbering to Off(0), Atom numbers (1) or IUPAC numbering (2) |
0 |
valencePropertyVisible |
Show (true) or hide (false) valence properties |
true |
atomsize |
Atom symbol font size in C-C bond length units: |
0.4 |
atomSymbolsVisible |
Show (true) or hide (false) atom symbols in 3D view |
true |
bondLengthVisible |
Show (true) or hide (false) bond length labels |
false |
bondSpacing |
Double bond spacing in C-C bond length units: |
0.18 |
chargeWithCircle |
Charge label (plus or minus sign) is displayed circled(true) or normal(false) |
false |
chiralitySupport |
When to show atom chirality (R/S).
|
off |
circledChargeFont |
Circled charge labels font: any of the fonts installed on the machine. Deprecated, will be removed by January 1st 2016. |
SansSerif |
circledChargeSize |
Circled Charge labels font size in C-C bond length units: |
0.4 |
colorScheme |
Color scheme.
|
cpk |
downWedge |
Wedge bond display convention. Down wedge points downward in MDL's convention (mdl), upward (at the chiral center) in Daylight's (daylight). |
mdl |
explicitH |
Show (true) or hide (false) explicit hydrogens. |
true |
ezVisible |
Show (true) or hide (false) E/Z labels. |
false |
grinv |
Show (true) or hide (false) graph invariants |
false |
implicitH |
How to display H labels.
|
false |
ligandErrorVisible |
Show (true) or not (false) ligand error by coloring to red. |
false |
lonePairsVisible |
Show (true) or hide (false) lone pairs |
false |
peptideDisplayType |
Show peptide sequences with one letter or three letter abbreviations. |
3-letter |
rgroupsVisible |
Show (true) or hide (false) R-group definitions |
true |
selection0selection1selection2... |
Comma-separated list of atom numbers (0, ..., n-1). |
|
showSets |
Show the specified atom sets only. Comma separated list of set sequence numbers (0, ..., 63). |
heteroterm |
sketchAnyBond |
Display type of the Any bond in the sketcher:
|
auto |
valenceErrorVisibleInView |
Show (true) or hide (false) valence errors |
true |
viewAnyBond |
Display type of the Any bond in the viewer:
|
auto |
zeroBasedAtomIndexing |
Starts the atom indexing from zero instead of one:
|
false |
viewAtomMarkEnabled |
Enables (true) or disables (false) atom highlight and atom mark in View. |
true |
viewCarbonVisibility |
Display the label of carbon atoms in structures.
|
inChain |
viewLigandOrderVisibility |
Display the ligand order of R-group atoms in structures.
|
off |