In this part, we will guide you through the details of the reaction enumeration process:

• Specifying Reactions

  • Reaction Scheme

  • Reaction Library

• Specifying Reactants

• Reaction Mapping

  • Orphan atoms

  • Other reaction mapping styles

• Reaction Rules

  • Exclude Rule

  • Reactivity Rule

  • Selectivity Rule

• Reactant Combinations

• Running Reactor

• Interfaces

  • Reactor Application

  • Reactor Command-line Application

  • Instant JChem

  • JChem for Excel

  • KNIME

  • Pipeline Pilot

  • Plexus Suite

  • API, Web Services

  • Glossary

For a quick help guide about getting started with Reactor, see Reactor in Step-by-Step.