Overlapping Bonds
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Checker searches for overlapping bonds: bonds crossing each other or bonds closer to each other than the set minimal value.
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Fixer offers cleaning the structure by:
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2D clean or (clean);
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partial clean (partialclean).
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Example :
Overlapping Bonds Checker (overlappingBonds) |
Warning: |
Fix |
Clean (clean) |
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Detect Overlapping Bonds |
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Note : Bridged polycycles are cleaned as far as their structure allows it, and the overlapping bonds warning will remain.